Detailed information of SNP:
|
SNP ID:
sf1127507791(Gbrowse)
Chromosome: chr11 Position: 27507791 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 92.01% | 7.99% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 493 | 90.26% | 9.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 331 | 86.40% | 13.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127507791 | A->G | LOC_Os11g46200(LOC_Os11g46200.1) | Non-Synonymous SNP |