Detailed information of SNP:
|
SNP ID:
sf1127508068(Gbrowse)
Chromosome: chr11 Position: 27508068 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1334 | 71.89% | 28.11% |
| All Indica | 762 | 75.59% | 24.41% |
| All Japonica | 459 | 69.93% | 30.07% |
| Aus | 63 | 36.51% | 63.49% |
| Indica I | 362 | 88.67% | 11.33% |
| Indica II | 202 | 63.37% | 36.63% |
| Indica Intermediate | 198 | 64.14% | 35.86% |
| Temperate Japonica | 301 | 81.06% | 18.94% |
| Tropical Japonica | 92 | 39.13% | 60.87% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127508068 | G->A | LOC_Os11g46200(LOC_Os11g46200.1) | Synonymous |