Detailed information of SNP:
|
SNP ID:
sf1127508074(Gbrowse)
Chromosome: chr11 Position: 27508074 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 64.14% | 35.86% |
| All Indica | 784 | 69.90% | 30.10% |
| All Japonica | 484 | 59.30% | 40.70% |
| Aus | 64 | 34.38% | 65.62% |
| Indica I | 367 | 83.11% | 16.89% |
| Indica II | 209 | 56.46% | 43.54% |
| Indica Intermediate | 208 | 60.10% | 39.90% |
| Temperate Japonica | 325 | 66.46% | 33.54% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127508074 | C->A | LOC_Os11g46200(LOC_Os11g46200.1) | Non-Synonymous SNP |