Detailed information of SNP:
|
SNP ID:
sf1127509855(Gbrowse)
Chromosome: chr11 Position: 27509855 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1313 | 73.04% | 26.96% |
| All Indica | 748 | 77.27% | 22.73% |
| All Japonica | 452 | 70.58% | 29.42% |
| Aus | 65 | 41.54% | 58.46% |
| Indica I | 356 | 78.65% | 21.35% |
| Indica II | 196 | 83.67% | 16.33% |
| Indica Intermediate | 196 | 68.37% | 31.63% |
| Temperate Japonica | 296 | 80.41% | 19.59% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 65 | 66.15% | 33.85% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127509855 | C->T | LOC_Os11g46200(LOC_Os11g46200.1) | Non-Synonymous SNP |