Detailed information of SNP:
|
SNP ID:
sf1127510834(Gbrowse)
Chromosome: chr11 Position: 27510834 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 91.99% | 8.01% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 493 | 83.77% | 16.23% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 331 | 92.15% | 7.85% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127510834 | G->A | LOC_Os11g46200(LOC_Os11g46200.1) | INTRON |