Detailed information of SNP:
|
SNP ID:
sf1127514235(Gbrowse)
Chromosome: chr11 Position: 27514235 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 78.48% | 21.52% |
| All Indica | 790 | 68.61% | 31.39% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 368 | 55.43% | 44.57% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 209 | 66.99% | 33.01% |
| Temperate Japonica | 334 | 89.22% | 10.78% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127514235 | G->C | LOC_Os11g46210(LOC_Os11g46210.1) | Synonymous |