Detailed information of SNP:
|
SNP ID:
sf1127538278(Gbrowse)
Chromosome: chr11 Position: 27538278 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.97% | 5.03% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 493 | 90.47% | 9.53% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127538278 | T->A | LOC_Os11g46250(LOC_Os11g46250.1) | Non-Synonymous SNP |