Detailed information of SNP:
|
SNP ID:
sf1127553410(Gbrowse)
Chromosome: chr11 Position: 27553410 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1317 | 55.05% | 44.95% |
| All Indica | 737 | 40.98% | 59.02% |
| All Japonica | 464 | 70.69% | 29.31% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 350 | 33.71% | 66.29% |
| Indica II | 190 | 47.89% | 52.11% |
| Indica Intermediate | 197 | 47.21% | 52.79% |
| Temperate Japonica | 309 | 67.31% | 32.69% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127553410 | G->A | INTERGENIC | None |