Detailed information of SNP:
|
SNP ID:
sf1127613750(Gbrowse)
Chromosome: chr11 Position: 27613750 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 95.11% | 4.89% |
| All Indica | 754 | 92.18% | 7.82% |
| All Japonica | 492 | 98.78% | 1.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 345 | 88.99% | 11.01% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 201 | 95.02% | 4.98% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127613750 | C->A | INTERGENIC | None |