Detailed information of SNP:
|
SNP ID:
sf1127618367(Gbrowse)
Chromosome: chr11 Position: 27618367 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 93.55% | 6.45% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 495 | 90.10% | 9.90% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 333 | 90.99% | 9.01% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127618367 | A->C | INTERGENIC | None |