Detailed information of SNP:
|
SNP ID:
sf1127636370(Gbrowse)
Chromosome: chr11 Position: 27636370 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1371 | 52.15% | 47.85% |
| All Indica | 776 | 39.69% | 60.31% |
| All Japonica | 483 | 72.67% | 27.33% |
| Aus | 58 | 36.21% | 63.79% |
| Indica I | 365 | 47.95% | 52.05% |
| Indica II | 206 | 16.02% | 83.98% |
| Indica Intermediate | 205 | 48.78% | 51.22% |
| Temperate Japonica | 323 | 71.21% | 28.79% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127636370 | T->C | INTERGENIC | None |