Detailed information of SNP:
|
SNP ID:
sf1127638159(Gbrowse)
Chromosome: chr11 Position: 27638159 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.44% | 9.56% |
| All Indica | 797 | 93.48% | 6.52% |
| All Japonica | 492 | 89.43% | 10.57% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 330 | 86.06% | 13.94% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127638159 | A->G | LOC_Os11g46880(LOC_Os11g46880.1) | INTRON |