Detailed information of SNP:
|
SNP ID:
sf1127646821(Gbrowse)
Chromosome: chr11 Position: 27646821 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 95.43% | 4.57% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 480 | 92.29% | 7.71% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 330 | 96.36% | 3.64% |
| Tropical Japonica | 84 | 77.38% | 22.62% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127646821 | A->G | INTERGENIC | None |