Detailed information of SNP:
|
SNP ID:
sf1127647330(Gbrowse)
Chromosome: chr11 Position: 27647330 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 94.63% | 5.37% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 495 | 91.72% | 8.28% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127647330 | T->C | INTERGENIC | None |