Detailed information of SNP:
|
SNP ID:
sf1127652308(Gbrowse)
Chromosome: chr11 Position: 27652308 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 90.57% | 9.43% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127652308 | G->A | LOC_Os11g46900(LOC_Os11g46900.1) | Synonymous |