Detailed information of SNP:
|
SNP ID:
sf1127675153(Gbrowse)
Chromosome: chr11 Position: 27675153 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 68.69% | 31.31% |
| All Indica | 790 | 95.70% | 4.30% |
| All Japonica | 477 | 27.46% | 72.54% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 319 | 28.53% | 71.47% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 65 | 23.08% | 76.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127675153 | C->T | INTERGENIC | None |