Detailed information of SNP:
|
SNP ID:
sf1127699749(Gbrowse)
Chromosome: chr11 Position: 27699749 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 58.99% | 41.01% |
| All Indica | 791 | 44.25% | 55.75% |
| All Japonica | 478 | 82.43% | 17.57% |
| Aus | 61 | 57.38% | 42.62% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 208 | 19.23% | 80.77% |
| Indica Intermediate | 208 | 59.13% | 40.87% |
| Temperate Japonica | 318 | 89.62% | 10.38% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127699749 | T->C | LOC_Os11g46950(LOC_Os11g46950.1) | Non-Synonymous SNP |