Detailed information of SNP:
|
SNP ID:
sf1127701046(Gbrowse)
Chromosome: chr11 Position: 27701046 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 89.34% | 10.66% |
| All Indica | 797 | 85.07% | 14.93% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127701046 | C->G | INTERGENIC | None |