Detailed information of SNP:
|
SNP ID:
sf1127722894(Gbrowse)
Chromosome: chr11 Position: 27722894 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 95.19% | 4.81% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127722894 | T->C | INTERGENIC | None |