Detailed information of SNP:
|
SNP ID:
sf1127723520(Gbrowse)
Chromosome: chr11 Position: 27723520 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 94.92% | 5.08% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127723520 | G->A | INTERGENIC | None |