Detailed information of SNP:
|
SNP ID:
sf1127724321(Gbrowse)
Chromosome: chr11 Position: 27724321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 86.31% | 13.69% |
| All Indica | 795 | 93.21% | 6.79% |
| All Japonica | 493 | 75.05% | 24.95% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 332 | 70.18% | 29.82% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127724321 | C->T | LOC_Os11g47000(LOC_Os11g47000.1) | Non-Synonymous SNP |