Detailed information of SNP:
|
SNP ID:
sf1127753967(Gbrowse)
Chromosome: chr11 Position: 27753967 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 65.90% | 34.10% |
| All Indica | 768 | 73.31% | 26.69% |
| All Japonica | 465 | 50.54% | 49.46% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 361 | 73.13% | 26.87% |
| Indica II | 200 | 79.50% | 20.50% |
| Indica Intermediate | 207 | 67.63% | 32.37% |
| Temperate Japonica | 314 | 37.58% | 62.42% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 61 | 62.30% | 37.70% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127753967 | A->C | LOC_Os11g47070(LOC_Os11g47070.1) | Non-Synonymous SNP |