Detailed information of SNP:
|
SNP ID:
sf1127798314(Gbrowse)
Chromosome: chr11 Position: 27798314 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 98.84% | 1.16% |
| All Indica | 790 | 99.37% | 0.63% |
| All Japonica | 467 | 97.86% | 2.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 322 | 98.45% | 1.55% |
| Tropical Japonica | 82 | 97.56% | 2.44% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127798314 | G->T | INTERGENIC | None |