Detailed information of SNP:
|
SNP ID:
sf1127817215(Gbrowse)
Chromosome: chr11 Position: 27817215 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 80.97% | 19.03% |
| All Indica | 773 | 80.21% | 19.79% |
| All Japonica | 487 | 81.31% | 18.69% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 358 | 75.42% | 24.58% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 203 | 77.34% | 22.66% |
| Temperate Japonica | 329 | 77.20% | 22.80% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127817215 | G->T | LOC_Os11g47130(LOC_Os11g47130.1) | INTRON |