Detailed information of SNP:
|
SNP ID:
sf1127828187(Gbrowse)
Chromosome: chr11 Position: 27828187 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 61.28% | 38.72% |
| All Indica | 784 | 65.56% | 34.44% |
| All Japonica | 458 | 53.49% | 46.51% |
| Aus | 64 | 54.69% | 45.31% |
| Indica I | 371 | 64.15% | 35.85% |
| Indica II | 207 | 81.16% | 18.84% |
| Indica Intermediate | 206 | 52.43% | 47.57% |
| Temperate Japonica | 301 | 55.48% | 44.52% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 64 | 56.25% | 43.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127828187 | T->C | INTERGENIC | None |