Detailed information of SNP:
|
SNP ID:
sf1127844836(Gbrowse)
Chromosome: chr11 Position: 27844836 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 96.85% | 3.15% |
| All Indica | 794 | 98.87% | 1.13% |
| All Japonica | 483 | 93.17% | 6.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 322 | 92.55% | 7.45% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127844836 | C->T | LOC_Os11g47150(LOC_Os11g47150.1) | Non-Synonymous SNP |