Detailed information of SNP:
|
SNP ID:
sf1127909394(Gbrowse)
Chromosome: chr11 Position: 27909394 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 97.05% | 2.95% |
| All Indica | 750 | 96.93% | 3.07% |
| All Japonica | 490 | 96.94% | 3.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 99.71% | 0.29% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 204 | 97.06% | 2.94% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127909394 | C->T | LOC_Os11g47290(LOC_Os11g47290.1) | INTRON |