Detailed information of SNP:
|
SNP ID:
sf1127915883(Gbrowse)
Chromosome: chr11 Position: 27915883 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.88% | 19.12% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 496 | 64.11% | 35.89% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 71.86% | 28.14% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127915883 | T->C | INTERGENIC | None |