Detailed information of SNP:
|
SNP ID:
sf1127920346(Gbrowse)
Chromosome: chr11 Position: 27920346 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 84.76% | 15.24% |
| All Indica | 797 | 80.68% | 19.32% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 66.49% | 33.51% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127920346 | A->C | INTERGENIC | None |