Detailed information of SNP:
|
SNP ID:
sf1127946047(Gbrowse)
Chromosome: chr11 Position: 27946047 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 86.05% | 13.95% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127946047 | T->A | LOC_Os11g47320(LOC_Os11g47320.2) | INTRON |
| sf1127946047 | T->A | LOC_Os11g47320(LOC_Os11g47320.1) | INTRON |