Detailed information of SNP:
|
SNP ID:
sf1127950751(Gbrowse)
Chromosome: chr11 Position: 27950751 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1205 | 70.54% | 29.46% |
| All Indica | 683 | 75.26% | 24.74% |
| All Japonica | 425 | 60.94% | 39.06% |
| Aus | 59 | 83.05% | 16.95% |
| Indica I | 318 | 98.74% | 1.26% |
| Indica II | 179 | 29.05% | 70.95% |
| Indica Intermediate | 186 | 79.57% | 20.43% |
| Temperate Japonica | 291 | 60.14% | 39.86% |
| Tropical Japonica | 76 | 56.58% | 43.42% |
| Japonica Intermediate | 58 | 70.69% | 29.31% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 29 | 65.52% | 34.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127950751 | A->G | INTERGENIC | None |