Detailed information of SNP:
|
SNP ID:
sf1127972979(Gbrowse)
Chromosome: chr11 Position: 27972979 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 86.44% | 13.56% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 489 | 78.53% | 21.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 332 | 86.14% | 13.86% |
| Tropical Japonica | 91 | 51.65% | 48.35% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127972979 | G->A | INTERGENIC | None |