Detailed information of SNP:
|
SNP ID:
sf1127973003(Gbrowse)
Chromosome: chr11 Position: 27973003 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 95.83% | 4.17% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 492 | 94.31% | 5.69% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 330 | 95.45% | 4.55% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127973003 | A->C | INTERGENIC | None |