Detailed information of SNP:
|
SNP ID:
sf1128125473(Gbrowse)
Chromosome: chr11 Position: 28125473 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.44% | 6.56% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128125473 | C->T | LOC_Os11g47446(LOC_Os11g47446.1) | SNPs that introduce stop codons |