Detailed information of SNP:



SNP ID: sf1128126188(Gbrowse)

Chromosome: chr11

Position: 28126188
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 95.97% 4.03%
All Indica799 99.75% 0.25%
All Japonica493 92.90% 7.10%
Aus67 76.12% 23.88%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica333 97.90% 2.10%
Tropical Japonica92 77.17% 22.83%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1128126188 G->A LOC_Os11g47446(LOC_Os11g47446.1) INTRON