Detailed information of SNP:
|
SNP ID:
sf1128126188(Gbrowse)
Chromosome: chr11 Position: 28126188 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 95.97% | 4.03% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 493 | 92.90% | 7.10% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128126188 | G->A | LOC_Os11g47446(LOC_Os11g47446.1) | INTRON |