Detailed information of SNP:
|
SNP ID:
sf1128141022(Gbrowse)
Chromosome: chr11 Position: 28141022 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.33% | 11.67% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 495 | 76.57% | 23.43% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 333 | 72.37% | 27.63% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128141022 | G->A | LOC_Os11g47448(LOC_Os11g47448.1) | Non-Synonymous SNP |