Detailed information of SNP:
|
SNP ID:
sf1128144688(Gbrowse)
Chromosome: chr11 Position: 28144688 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 97.25% | 2.75% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128144688 | C->T | LOC_Os11g47449(LOC_Os11g47449.1) | Synonymous |