Detailed information of SNP:
|
SNP ID:
sf1128146013(Gbrowse)
Chromosome: chr11 Position: 28146013 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 87.55% | 12.45% |
| All Indica | 783 | 79.69% | 20.31% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 83.24% | 16.76% |
| Indica II | 207 | 71.50% | 28.50% |
| Indica Intermediate | 206 | 81.55% | 18.45% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128146013 | T->C | INTERGENIC | None |