Detailed information of SNP:
|
SNP ID:
sf1128185061(Gbrowse)
Chromosome: chr11 Position: 28185061 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 83.68% | 16.32% |
| All Indica | 790 | 74.68% | 25.32% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 63 | 71.43% | 28.57% |
| Indica I | 372 | 82.26% | 17.74% |
| Indica II | 209 | 61.24% | 38.76% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128185061 | A->G | LOC_Os11g47470(LOC_Os11g47470.1) | Synonymous |