Detailed information of SNP:
|
SNP ID:
sf1128236911(Gbrowse)
Chromosome: chr11 Position: 28236911 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 82.28% | 17.72% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 491 | 57.03% | 42.97% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 331 | 65.26% | 34.74% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128236911 | T->A | INTERGENIC | None |