Detailed information of SNP:
|
SNP ID:
sf1128240449(Gbrowse)
Chromosome: chr11 Position: 28240449 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 75.71% | 24.29% |
| All Indica | 799 | 65.08% | 34.92% |
| All Japonica | 494 | 92.91% | 7.09% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 332 | 90.06% | 9.94% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128240449 | A->G | INTERGENIC | None |