Detailed information of SNP:
|
SNP ID:
sf1128246157(Gbrowse)
Chromosome: chr11 Position: 28246157 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1283 | 86.28% | 13.72% |
| All Indica | 786 | 83.46% | 16.54% |
| All Japonica | 380 | 90.00% | 10.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 202 | 84.16% | 15.84% |
| Temperate Japonica | 279 | 90.32% | 9.68% |
| Tropical Japonica | 49 | 83.67% | 16.33% |
| Japonica Intermediate | 52 | 94.23% | 5.77% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128246157 | T->C | INTERGENIC | None |