Detailed information of SNP:
|
SNP ID:
sf1128246199(Gbrowse)
Chromosome: chr11 Position: 28246199 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 89.93% | 10.07% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 480 | 73.12% | 26.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 322 | 83.23% | 16.77% |
| Tropical Japonica | 91 | 37.36% | 62.64% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128246199 | A->G | INTERGENIC | None |