Detailed information of SNP:
|
SNP ID:
sf1128247504(Gbrowse)
Chromosome: chr11 Position: 28247504 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 85.68% | 14.32% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 492 | 65.04% | 34.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 332 | 72.89% | 27.11% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128247504 | C->T | LOC_Os11g47640(LOC_Os11g47640.1) | INTRON |