Detailed information of SNP:
|
SNP ID:
sf1128265544(Gbrowse)
Chromosome: chr11 Position: 28265544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.30% | 27.70% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 497 | 66.00% | 34.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128265544 | T->C | INTERGENIC | None |