Detailed information of SNP:



SNP ID: sf1128265544(Gbrowse)

Chromosome: chr11

Position: 28265544
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 72.30% 27.70%
All Indica799 76.85% 23.15%
All Japonica497 66.00% 34.00%
Aus67 73.13% 26.87%
Indica I375 73.33% 26.67%
Indica II213 85.45% 14.55%
Indica Intermediate211 74.41% 25.59%
Temperate Japonica335 78.21% 21.79%
Tropical Japonica94 24.47% 75.53%
Japonica Intermediate68 63.24% 36.76%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1128265544 T->C INTERGENIC None