Detailed information of SNP:
|
SNP ID:
sf1128268556(Gbrowse)
Chromosome: chr11 Position: 28268556 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.14% | 20.86% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 67.40% | 32.60% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128268556 | A->G | INTERGENIC | None |