Detailed information of SNP:
|
SNP ID:
sf1128269948(Gbrowse)
Chromosome: chr11 Position: 28269948 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1311 | 88.79% | 11.21% |
| All Indica | 787 | 99.75% | 0.25% |
| All Japonica | 403 | 66.25% | 33.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 261 | 82.76% | 17.24% |
| Tropical Japonica | 88 | 20.45% | 79.55% |
| Japonica Intermediate | 54 | 61.11% | 38.89% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128269948 | T->C | LOC_Os11g47730(LOC_Os11g47730.2) | UTR_5_PRIME |
| sf1128269948 | T->C | LOC_Os11g47730(LOC_Os11g47730.1) | UTR_5_PRIME |