Detailed information of SNP:
|
SNP ID:
sf1128271927(Gbrowse)
Chromosome: chr11 Position: 28271927 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 79.32% | 20.68% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 496 | 62.90% | 37.10% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 334 | 71.56% | 28.44% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128271927 | G->T | INTERGENIC | None |