Detailed information of SNP:
|
SNP ID:
sf1128278100(Gbrowse)
Chromosome: chr11 Position: 28278100 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.11% | 29.89% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 493 | 41.38% | 58.62% |
| Aus | 65 | 41.54% | 58.46% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 333 | 54.95% | 45.05% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128278100 | T->A | LOC_Os11g47740(LOC_Os11g47740.1) | INTRON |