Detailed information of SNP:
|
SNP ID:
sf1128278166(Gbrowse)
Chromosome: chr11 Position: 28278166 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 65.58% | 34.42% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 495 | 36.77% | 63.23% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 334 | 48.80% | 51.20% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1128278166 | A->G | LOC_Os11g47740(LOC_Os11g47740.1) | INTRON |